rs29604906 SNP Detail

Summary

• ID
  rs29604906
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29199598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA GGAAACAGGT CTGAAGTGAA
  S
  GAGAGTCTGG CTTCTATCTG TCCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45880884	mCV22536904	ABI	CRAMUS_MOUSE	f	SNP		G					C		G
ss47862058	NES11680831	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C	G	G	C		C	G	C	C		G
ss133091630	ENSMUSSNP2718715	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321775081	CHEV_6_29149599	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29604906					SNP	G	G	G	G	G	G	C	C	G	G	C	G	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862058	NES11680831	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29199598 () rs orientation: forward

Symbol	Name	Function Class
Gm67825	predicted gene, 67825	1091 bp downstream
Gm68017	predicted gene, 68017	260 bp downstream
Impdh1	inosine monophosphate dehydrogenase 1	837 bp downstream
Rr627510	regulatory region 627510	830 bp distal
Rr627511	regulatory region 627511	within coordinates
Rr627512	regulatory region 627512	780 bp distal
Rr627513	regulatory region 627513	375 bp distal
Tssr60073	transcription start site region 60073	1558 bp downstream