rs29604908 SNP Detail

Summary

• ID
  rs29604908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29199829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC CTTGCAGGTG AAGGGCTCTG
  Y
  TATACAGCAG CTGTCTGTAC TTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45876854	mCV22536905	ABI	CRAMUS_MOUSE	f	SNP		T	T			C		T
ss47862060	NES11680832	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		C		T	C		C	T	C	C		C
ss133091633	ENSMUSSNP4137378	ENSEMBL	ENSEMBL_Sanger	f	SNP			T					T
ss321775082	CHEV_6_29149830	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29604908					SNP	T	T	T	T	T	C	C	T	T	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862060	NES11680832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29199829 () rs orientation: forward

Symbol	Name	Function Class
Gm67825	predicted gene, 67825	1322 bp downstream
Gm68017	predicted gene, 68017	491 bp downstream
Impdh1	inosine monophosphate dehydrogenase 1	606 bp downstream
Rr627510	regulatory region 627510	1061 bp distal
Rr627511	regulatory region 627511	30 bp distal
Rr627512	regulatory region 627512	1011 bp distal
Rr627513	regulatory region 627513	606 bp distal
Tssr60073	transcription start site region 60073	1327 bp downstream