rs29605018 SNP Detail

Summary

• ID
  rs29605018
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124194755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTTGTTTAT CGCCCCCCAA GCTGGATTGG AAGATGACGT CACCCTGTTG TTACCCACCG
  AGTGACGCCT GGATGCTCCT CAGGCTCCGC CCCTTTTGGT CAGGAATTGA TGTCTTGAAA
  CATTGGCATA GCATTTGCAT TTCATTTGAA TATTCATTAC CACATTTGCA TGCAGACAAG
  CCAAAGATTT GTGAGTTTAT GAATTATTAA AAAACAGGAA GTGACCTCAG CCTGAGGTCC
  AGACAGGAAG TAGCCCCACC ACGAGTTCTA GACAGGAAGT GATCCCGGGG TCACATGGTA
  K
  AGGCTGTAGC CCACCATGAA CTTGGCCCCG CCCACCTACA CCATGCCTCC GCCTCCCGGT
  TAATTTGCAT ATTCTAGAGT GGAGAAAGCA CAGAGCATGG GGGGGGTGGT GGCGAGGGGG
  GTGGGAGAAG AGCATATGCA AAACTTCAAT GAATATGCAA ATGATACGCG ATCCGTTCGC
  CGTTCGGAGG GCGGGGCCCT CATTTGCATA TTTATGAGAG GAACCGAATG CTGTGGTGTA
  ATTATTGCTT CGGCCGGTCC GGTCCGAGCC GGTCCGGTCC GAGCCGAGGC CGCCCAGTCC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46323964	mCV24427003	ABI	CRAMUS_MOUSE	f	SNP	T		G	G
ss134041046	ENSMUSSNP3261155	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29605018					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124194755 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	370 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	657 bp upstream
Rr689518	regulatory region 689518	834 bp distal
Rr689519	regulatory region 689519	167 bp proximal
Rr689520	regulatory region 689520	1035 bp proximal
Rr689521	regulatory region 689521	1151 bp proximal
Tssr3091	transcription start site region 3091	1964 bp downstream
Tssr3092	transcription start site region 3092	1936 bp downstream
Tssr3093	transcription start site region 3093	1916 bp downstream
Tssr3094	transcription start site region 3094	1864 bp upstream
Tssr3095	transcription start site region 3095	1663 bp upstream
Tssr3096	transcription start site region 3096	1583 bp upstream
Tssr3097	transcription start site region 3097	1507 bp upstream
Tssr3098	transcription start site region 3098	1156 bp upstream
Tssr3099	transcription start site region 3099	1053 bp upstream
Tssr3100	transcription start site region 3100	1028 bp upstream
Tssr3101	transcription start site region 3101	916 bp upstream
Tssr3102	transcription start site region 3102	773 bp upstream
Tssr3103	transcription start site region 3103	731 bp upstream
Tssr3104	transcription start site region 3104	639 bp upstream
Tssr3105	transcription start site region 3105	529 bp upstream