rs29605111 SNP Detail

Summary

• ID
  rs29605111
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57817252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGTGGT ACTGATAACT
  CCCCATTCCT GTTTAGCTCT TGCATAACAG ACTTTTCATG TTGGTTGTCT AGTCTCAGAC
  CAAAGACTAT GGGCATGATA ACAGCATCTC CTCACAGCTT ATACTAATCT TGTGCCTTCG
  ATGATGAAAG ATCCTTCTGT TTCTTAATAC GTTATGGTTT CTCTGGATCA CATGGTCCAG
  K
  AGTCCCTTCT GGTTCTCCAA TAAGAAACTG TATCAGATCT TAACCTTTTC CTGTGACAGC
  TCCTGCCAGT AGACCGCCCT ACCTTTCCTT TTCGTCCCTC ACTCCTTAGA GCCTGTGCCC
  TCAGGCCAGC CTTTGCTGTC TGCTGGCAAA TTTTACATCC CTCCTCATCT TCCTCTCTTT
  ACCATTGAGT TCCCCAACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47363941	NES11071195	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29605111					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47363941	NES11071195	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57817252 () rs orientation: forward

Symbol	Name	Function Class
Rr411364	regulatory region 411364	1087 bp distal
Spats2l	spermatogenesis associated, serine-rich 2-like	within coordinates
Tssr6750	transcription start site region 6750	1021 bp downstream