rs29605785 SNP Detail

Summary

• ID
  rs29605785
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43357792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAGATG CTGTTTTAGT
  GAAGTTAAAC AGTAAAGTTA GCGTTCTTTC TCCACACACA CAAGAAGTAA GACCAGTTAG
  CCACGAAGAC AGAATACAGA CTAGCCAGCA TTCCAACCGT CTGTTAGAGA TTGATAGGTT
  ATCTGGGGAC CCTTGGGGGC ACCAAAGGTG GGGGCAGAAT ATTTAGGAAC AGGAAAATTG
  K
  ACTCAGCCCT GACAGAGGTT TGATTGGGTG AGGATTAAGC TCCTGTAGGA GACCCATCTA
  CAGAACTGCC TAGAAATGCA TTAGCACCTG TAATAATAAT TTATACAAGA GACTAGGGAA
  TGGCGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TAATTTTTAT AAGTGAGACT
  ATGCTTGCTA TTCTAACCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47861289	NES11964702	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29605785					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47861289	NES11964702	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43357792 () rs orientation: forward

Symbol	Name	Function Class
Bend3	BEN domain containing 3	within coordinates
Cpgi1500	CpG island 1500	1654 bp distal
Rr430778	regulatory region 430778	1015 bp distal
Rr430779	regulatory region 430779	1911 bp distal
Rr430780	regulatory region 430780	417 bp distal
Rr430781	regulatory region 430781	within coordinates
Rr430782	regulatory region 430782	1502 bp proximal