rs29606178 SNP Detail

Summary

• ID
  rs29606178
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108221321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTGGCTG CAGTTGGAGC
  TAATGAGTTC CGGAGTCTGC CCATGGCGAT GAACCCCATC CTTTTCAGTA ATGTGCTTAG
  AGTCATAGGC ACTGTTTAAA TACTGACCAC AGGCCGACTC AAGCCTTTCG CCTGATTTTT
  GAGAGAAAAC CCGCTTTGCT AACACACCCT TTACTAGAGA GCTGCCTTGC TTGTTTGCGG
  W
  ATGGTGTCCT GTTAACAAGG CTCTTTTTCT TCTTGGCTCT GTGATATTGC TGCCATAGTC
  TTTACCAGTC ATTCTGAATA TTCATTATCT CTCCTCGTTG TGAACTGAGA TAGGATTCTG
  TCTCCTGTTG CAGAGTTTAG GAGGAAACTG TAAATACGCC CTGCTGGCTC TTCAGCTGAG
  CTGGCCTGCC CTGGCCTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46863696	NES10700899	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29606178					SNP	A	A	A	A	A	A	T	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863696	NES10700899	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108221321 () rs orientation: forward

Symbol	Name	Function Class
Rr583205	regulatory region 583205	577 bp distal
Rr583206	regulatory region 583206	123 bp proximal
Rr583207	regulatory region 583207	437 bp proximal
Sort1	sortilin 1	Intron
Tssr31242	transcription start site region 31242	1075 bp downstream