rs29607040 SNP Detail

Summary

• ID
  rs29607040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108221594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAATATT CATTATCTCT
  CCTCGTTGTG AACTGAGATA GGATTCTGTC TCCTGTTGCA GAGTTTAGGA GGAAACTGTA
  AATACGCCCT GCTGGCTCTT CAGCTGAGCT GGCCTGCCCT GGCCTGAAAT GACTTTGTTG
  AGCTCGCCAG CCAAAGTGCA CCTGTTGCTT CAGAAATGGA AAAGGGAGGG CCGTTTACTC
  R
  CAGTGGGTCC TGGGTAGTTT TCAGTTGCCC AATCCCGTAA TAAAAGCTGG CAGAGTCTGC
  TCTAACAACT CTTCTGTTTT TCACAGCTTT GATGACTATA GTTTATTGAT TTGCCTTTGT
  TCAGGAAAGC TTCATTTGGA ATGCAAATTA CAGGATAGGT AAATGTGTGC CTCCTGCTGG
  GTAGAGCTAG GCATGAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46863708	NES10700903	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29607040					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863708	NES10700903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108221594 () rs orientation: forward

Symbol	Name	Function Class
Rr583205	regulatory region 583205	850 bp distal
Rr583206	regulatory region 583206	within coordinates
Rr583207	regulatory region 583207	164 bp proximal
Sort1	sortilin 1	Intron
Tssr31242	transcription start site region 31242	1348 bp downstream