rs29607188 SNP Detail

Summary

• ID
  rs29607188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190958669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAATATGC AACCCCTGGA
  AGGGTAGTTC AACCCCCAAA GGGGTCTTAA CTCCCAGGTT GAGAACCACT GCTCTTGATC
  CTATTTTTTT TCTTTTTTTT AATTAGGTAT TTTCTTCATT TACATTTCCA ATGCTATCCC
  AAAAGTCCCC CATACCCTCC TCCCCACTCC CCTCCCCCCA ACTTGATCCT ATTTTTTATG
  Y
  ATGCTATTGA GAATTAAACC AAGGGCTTCA TTGTATTCTA CACTAAATTG TACCTTGAGC
  TGCCTTTTTA TTATTTTATT ATTTATCTCA GTTTTATTGT TGAGAAACTC TTTTACATTT
  AGGAGCTAAA TGTGGTTTCC ATCAAAACTG TAAGGTATTC AAGGGAGTTT AGAGGACACC
  AATCCTTCCA TTCACTGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547534	NES12905143	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29607188					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547534	NES12905143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190958669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	1451 bp distal
D730003I15Rik	RIKEN cDNA D730003I15 gene	785 bp downstream
Rr29193	regulatory region 29193	868 bp distal
Rr396716	regulatory region 396716	170 bp upstream
Tssr372	transcription start site region 372	1616 bp upstream
Tssr10745	transcription start site region 10745	1951 bp downstream
Tssr10746	transcription start site region 10746	1410 bp downstream
Tssr10747	transcription start site region 10747	1005 bp downstream
Tssr15770	transcription start site region 15770	1503 bp upstream
Tssr15771	transcription start site region 15771	1485 bp upstream
Tssr15772	transcription start site region 15772	1207 bp upstream
Tssr15773	transcription start site region 15773	1186 bp upstream