rs29607189 SNP Detail

Summary

• ID
  rs29607189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190958059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGATAAA AGTGGTTTCT
  AATGGTTGAG TGCTTCAGTT TCTTCTTTCC AACCCCCTAT CCCCACTTTT TAAAAGAAAG
  GTTAATCGTG GAGAATGTGA CAAGAATGAG AGAATCTGGT GTGTTCTTTC GTTTGCATTC
  CAAAAATAAA TACAACCCTT CTGAGTTCAT ATGCAAACAT GGATGTGCAA ACATTTTAGA
  R
  CTTTAGTCCC TGTAATTATC CACCTCTAAC CAGTTTAAAG GACCTGAAGG TTGGGCTGGA
  AAGATGACTT AGCAGTTAAG AGCACTGGCT GCTCTTCCAG AGGACCACAT GGCAACTCAC
  AGCTGTCTGT AACCCCTGTT CCAGGGGACC AACTCCCTCA TACATGCAGG CAAAACACAA
  TGTACATAAA ATAAAAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547535	NES12905279	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29607189					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547535	NES12905279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190958059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	841 bp distal
D730003I15Rik	RIKEN cDNA D730003I15 gene	175 bp downstream
Gm70871	predicted gene, 70871	893 bp upstream
Rr29193	regulatory region 29193	258 bp distal
Rr396715	regulatory region 396715	1409 bp downstream
Rr396716	regulatory region 396716	780 bp upstream
Tssr372	transcription start site region 372	1006 bp upstream
Tssr10744	transcription start site region 10744	1401 bp downstream
Tssr10745	transcription start site region 10745	1341 bp downstream
Tssr10746	transcription start site region 10746	800 bp downstream
Tssr10747	transcription start site region 10747	395 bp downstream
Tssr15770	transcription start site region 15770	893 bp upstream
Tssr15771	transcription start site region 15771	875 bp upstream
Tssr15772	transcription start site region 15772	597 bp upstream
Tssr15773	transcription start site region 15773	576 bp upstream