rs29607190 SNP Detail

Summary

• ID
  rs29607190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190957825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCAGATA AAAGTTTAGT
  GTTGAAGAAA TGAATGCCAG GCACCTTGTA AAATTGGCAC CGCAGCCCTG TCATCAGAAA
  GTGAGCTGTT CTTTTGACAC ACAGAGTTGT TTGCCATGTC ACAGTGACCT GCATTCTGTT
  AGTGAGGGAG CCTCAGGTTT CACATGGGTT GTCTCTGTAT AAGCTGTAAA ATGATAGCCT
  Y
  TGGCCTTTAT GGTATTGGGA AACTTGAAGT GTTTAATGAT AAAAGTGGTT TCTAATGGTT
  GAGTGCTTCA GTTTCTTCTT TCCAACCCCC TATCCCCACT TTTTAAAAGA AAGGTTAATC
  GTGGAGAATG TGACAAGAAT GAGAGAATCT GGTGTGTTCT TTCGTTTGCA TTCCAAAAAT
  AAATACAACC CTTCTGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547536	NES12905278	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29607190					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547536	NES12905278	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190957825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	607 bp distal
D730003I15Rik	RIKEN cDNA D730003I15 gene	within coordinates
Rr29193	regulatory region 29193	24 bp distal
Rr396715	regulatory region 396715	1175 bp downstream
Rr396716	regulatory region 396716	1014 bp upstream
Tssr372	transcription start site region 372	772 bp upstream
Tssr10744	transcription start site region 10744	1167 bp downstream
Tssr10745	transcription start site region 10745	1107 bp downstream
Tssr10746	transcription start site region 10746	566 bp downstream
Tssr10747	transcription start site region 10747	161 bp downstream
Tssr15770	transcription start site region 15770	659 bp upstream
Tssr15771	transcription start site region 15771	641 bp upstream
Tssr15772	transcription start site region 15772	363 bp upstream
Tssr15773	transcription start site region 15773	342 bp upstream