rs29607599 SNP Detail

Summary

• ID
  rs29607599
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194894363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTTTGG TTTTTCAAGA
  CAGGGTTTCT CTGTGTAGCC CTGGTTGTCC TGGAACTCAC TCTGTAGACC AGGCTGGCCT
  CCAACTCAGA AATTCACCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGG CGTGTGCCAC
  CACTGCCGGG CAGCCCACAC TTTTCTATCA AAAGAAACCA AAATGACAGA ATATGAAGAT
  K
  TTCACTGCTA TGGATCATAT TAATTTGTAC TATCCAGGAC TCCAAATAGA ACAGCAATCA
  AATAGAAATT TTAAAGTATC CATGAGTTTT GCAGGCAAAC AGATGGAACT AGAAAATACC
  ATCCTGAGTG AGATAACTCA GACCCAAAAG AATATGCATG GTATGTGCTC ACTAATAAGT
  GGATATTAGC CAAAAAATAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49548115	NES12887175	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29607599					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548115	NES12887175	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194894363 () rs orientation: forward

Symbol	Name	Function Class
Gm71207	predicted gene, 71207	within coordinates
Rr372685	regulatory region 372685	82 bp upstream