rs29607601 SNP Detail

Summary

• ID
  rs29607601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194893452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTCTCT CTCTTTTGTA
  TTTCTTTGTC TTTGGGATTA TAAAAGTTTA CTATGAACTC ATCCTTTATG GAGTTGTTTC
  CAGAAGATTA ATGTATACAT GTTTATAAAG GTATCTATGA GATAAAAACA GGTTTGGCTT
  TTTCACACTC CTAAGGATTT CAGTAAACTA AGAATTTATC ATATGGAATT TTCCACAGAC
  R
  GATCTGTAAT GCAAATCATA CAACACCTCC TGCAAGGTGT AGGGGTAAGC TTCTCATTTC
  TGTTTTCTTC CCCAGAACAC ATTCATTGAC CTTCTTCTTC TCAGCATCAG TGGCTTAGTG
  AGTACAATGG TCTAGTTGCT ATGGTATAGA TTGGCTTTCA TTTTAAAGAA TTAATTTCTA
  AATTTAACTT TTCTTAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49548117	NES12887241	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29607601					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548117	NES12887241	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194893452 () rs orientation: forward

Symbol	Name	Function Class
Gm71207	predicted gene, 71207	within coordinates
Rr372685	regulatory region 372685	993 bp upstream