rs29608066 SNP Detail

Summary

• ID
  rs29608066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190956239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCTGAGGAC TTCCCGTGTG TCTGGCGTGA GTAGCCAGAA
  GACGGACTGT GACCACCTGC CATTGTCCCA CTGGGCTCCC TTCCCACAGT GCGACCTCTC
  Y
  GAAACTGTTC TTGGCATGAC CGTGACCACA GTGGATGGCT CAGGACTGAG AAGCAAGGCC
  TGCCTCGGGC AGCTCTGGCC CTAATGGGCC AGCCCAGGTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547542	NES12905272	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29608066					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547542	NES12905272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190956239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	within coordinates
D730003I15Rik	RIKEN cDNA D730003I15 gene	412 bp upstream
Gm70871	predicted gene, 70871	within coordinates
Rr26272	regulatory region 26272	1563 bp distal
Rr29193	regulatory region 29193	within coordinates
Rr396715	regulatory region 396715	110 bp upstream
Tssr372	transcription start site region 372	805 bp downstream
Tssr10744	transcription start site region 10744	401 bp upstream
Tssr10745	transcription start site region 10745	420 bp upstream
Tssr10746	transcription start site region 10746	1004 bp upstream
Tssr10747	transcription start site region 10747	1398 bp upstream
Tssr15770	transcription start site region 15770	869 bp downstream
Tssr15771	transcription start site region 15771	934 bp downstream
Tssr15772	transcription start site region 15772	1217 bp downstream
Tssr15773	transcription start site region 15773	1230 bp downstream