rs29608068 SNP Detail

Summary

• ID
  rs29608068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190954769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTATGAT GACACCAGAT
  CTCAGTTACT GCAGATTTAA AAACAGCAGT GGACCTCATA GTGCCATTCT GTGGGGAAAA
  TCACCCTCTG GGTCACCTGT CTGGAAGTTG GGTGGAAGAG AGAAGATGGG AGAGATGGCA
  GTCCCCAGAA CCCTTTCTCG AGTTCTTCCT ATGTTCACGC CACGACGTTT TATGTCACAT
  R
  TCTGACCTCT GACAGTTTGC AGGCTCATTC GTACCCATTG CCCTACCTGG GTCTTTTTTT
  TTTTAAGTTG TTTTTCTGAT CCCCCCCCTT TTTAATTATT TTCTTTTGTT AACATACAAA
  GAAATGGGTT CCATTGTGAT GTGTTTATAC ACAGGCCCTA ATACTTTCTT ATTCTCCTCT
  TGACTGCCCT CTAAGCCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547544	NES12905335	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29608068					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547544	NES12905335	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190954769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	1271 bp proximal
D730003I15Rik	RIKEN cDNA D730003I15 gene	1882 bp upstream
Gm70871	predicted gene, 70871	1148 bp downstream
Rr26272	regulatory region 26272	93 bp distal
Rr29193	regulatory region 29193	1231 bp proximal
Rr396715	regulatory region 396715	1580 bp upstream
Tssr10744	transcription start site region 10744	1871 bp upstream
Tssr10745	transcription start site region 10745	1890 bp upstream