rs29608070 SNP Detail

Summary

• ID
  rs29608070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190954645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGGAAGCT CAGAAAATCA AACGCTGCTA TGATGACACC
  AGATCTCAGT TACTGCAGAT TTAAAAACAG CAGTGGACCT CATAGTGCCA TTCTGTGGGG
  R
  AAATCACCCT CTGGGTCACC TGTCTGGAAG TTGGGTGGAA GAGAGAAGAT GGGAGAGATG
  GCAGTCCCCA GAACCCTTTC TCGAGTTCTT CCTATGTTCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547546	NES12905328	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29608070					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547546	NES12905328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190954645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	1395 bp proximal
Gm70871	predicted gene, 70871	1272 bp downstream
Rr26272	regulatory region 26272	within coordinates
Rr29193	regulatory region 29193	1355 bp proximal
Rr396715	regulatory region 396715	1704 bp upstream
Tssr10744	transcription start site region 10744	1995 bp upstream