rs29609006 SNP Detail

Summary

• ID
  rs29609006
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190954058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTACTA AATCATTATC
  ATTCAATTAC AATTATTATT TTATGTGTAA CAGTTATAGA GTTTCTGTTA TTATTATTAT
  TATAGCAAAC CCCTCACCCT TCATTTTAAG ACATAAACTC TTACATAAAT GGTGAAGCTA
  CTTAATGCCT GAATAGACTG GATAGGCTGC AATATAAATA AAGAAAGTTT CTAATAAATT
  M
  CTAGGGGTGC AGATGTCCAA GTTATACAGG GAGGTAGGAA TAAGCACGGT GCACTTCTGA
  CCTGTGAGAA GGACGACCTG ATCCTACCCA GCTATCTTAG GAGCGTTGTG TGAAACAGGA
  GTACTCTAGG ACAGGGCTCA TGGCTCACAA GCACACGGCT CGAGAATTAC CATGGAGTCC
  AGCTCAGCCA GTGACTTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547552	NES12905312	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609006					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547552	NES12905312	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190954058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	1982 bp proximal
Rr26272	regulatory region 26272	50 bp proximal
Rr29193	regulatory region 29193	1942 bp proximal