rs29609115 SNP Detail

Summary

• ID
  rs29609115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190920674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTACTCT ACATTAGTAT
  TTGGGGTGCT ACCAACATTT TGCTAACATG CTAGACACAC TTTACTCTTT TTGATGGAAA
  AAGACACCAA CTGCCAGCTT CCCTTGGGTT ACTTAAATGG AGTTAGGAGA GGGTCTTGGT
  TCAATCCTCA AATGCTACAC ACACTGGAAG AGAGAAGGAT CCTAGGAGCC AGAAACGACC
  Y
  GAATGTCCAT GCTCCTTTGC TAACATCCAA AGAGAAAACC ATGCAGGCTC TTTTCCCATG
  GAGCACGTCC TTTGACCCTT CCACTGTACC TTTGAGACCC CGTGATACTG TCTGCCCATT
  GTGGAAGAGG AAACTCAGTC AGCACATGAG AGAGTGATAA CCGGCAGGAC CACCTGGCAA
  TGCTTCTGCC TGTGGCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547731	NES12907355	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609115					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547731	NES12907355	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190920674 () rs orientation: forward

Symbol	Name	Function Class
Rr372645	regulatory region 372645	394 bp upstream
Rr426070	regulatory region 426070	1545 bp distal
Rr426071	regulatory region 426071	1815 bp distal
Rr426072	regulatory region 426072	1774 bp distal
Tssr10738	transcription start site region 10738	1776 bp downstream
Tssr10739	transcription start site region 10739	1616 bp upstream
Tssr15765	transcription start site region 15765	1985 bp upstream
Tssr15766	transcription start site region 15766	1451 bp downstream