rs29609116 SNP Detail

Summary

• ID
  rs29609116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190920620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCATTG CCATAGTCAC
  TGGGAGCTCA TGGGTGTTGT ATAACTTAAC TCAGTTGTTA CTCTACATTA GTATTTGGGG
  TGCTACCAAC ATTTTGCTAA CATGCTAGAC ACACTTTACT CTTTTTGATG GAAAAAGACA
  CCAACTGCCA GCTTCCCTTG GGTTACTTAA ATGGAGTTAG GAGAGGGTCT TGGTTCAATC
  Y
  TCAAATGCTA CACACACTGG AAGAGAGAAG GATCCTAGGA GCCAGAAACG ACCCGAATGT
  CCATGCTCCT TTGCTAACAT CCAAAGAGAA AACCATGCAG GCTCTTTTCC CATGGAGCAC
  GTCCTTTGAC CCTTCCACTG TACCTTTGAG ACCCCGTGAT ACTGTCTGCC CATTGTGGAA
  GAGGAAACTC AGTCAGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547732	NES12907353	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609116					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547732	NES12907353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190920620 () rs orientation: forward

Symbol	Name	Function Class
Rr372645	regulatory region 372645	448 bp upstream
Tssr10738	transcription start site region 10738	1722 bp downstream
Tssr10739	transcription start site region 10739	1670 bp upstream
Tssr15765	transcription start site region 15765	1931 bp upstream
Tssr15766	transcription start site region 15766	1505 bp downstream