rs29609117 SNP Detail

Summary

• ID
  rs29609117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190920600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGTGGGA CCCACTGCCC
  TGACTCATTG CCATAGTCAC TGGGAGCTCA TGGGTGTTGT ATAACTTAAC TCAGTTGTTA
  CTCTACATTA GTATTTGGGG TGCTACCAAC ATTTTGCTAA CATGCTAGAC ACACTTTACT
  CTTTTTGATG GAAAAAGACA CCAACTGCCA GCTTCCCTTG GGTTACTTAA ATGGAGTTAG
  R
  AGAGGGTCTT GGTTCAATCC TCAAATGCTA CACACACTGG AAGAGAGAAG GATCCTAGGA
  GCCAGAAACG ACCCGAATGT CCATGCTCCT TTGCTAACAT CCAAAGAGAA AACCATGCAG
  GCTCTTTTCC CATGGAGCAC GTCCTTTGAC CCTTCCACTG TACCTTTGAG ACCCCGTGAT
  ACTGTCTGCC CATTGTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547733	NES12907351	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609117					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547733	NES12907351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190920600 () rs orientation: forward

Symbol	Name	Function Class
Rr372645	regulatory region 372645	468 bp upstream
Rr426070	regulatory region 426070	1471 bp distal
Rr426071	regulatory region 426071	1741 bp distal
Rr426072	regulatory region 426072	1700 bp distal
Tssr10738	transcription start site region 10738	1702 bp downstream
Tssr10739	transcription start site region 10739	1690 bp upstream
Tssr15765	transcription start site region 15765	1911 bp upstream
Tssr15766	transcription start site region 15766	1525 bp downstream