rs29609123 SNP Detail

Summary

• ID
  rs29609123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190920037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTCTGTCT CTAAAACAAA AGCAAGCACC TCTTACAATA
  GTATTTTGCC ATAATGAGAA TTAGGGAAAA GGCAAAAGAA AAAAAGTACC TGTAATCCCA
  R
  CACTGTCAGT ATTTTGAGTT ATCTTTCTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTTTTCCTTC ATTATACACA TGATTTTAAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547739	NES12907342	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609123					SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547739	NES12907342	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190920037 () rs orientation: forward

Symbol	Name	Function Class
Rr372645	regulatory region 372645	1031 bp upstream
Rr426070	regulatory region 426070	908 bp distal
Rr426071	regulatory region 426071	1178 bp distal
Rr426072	regulatory region 426072	1137 bp distal
Tssr10737	transcription start site region 10737	1918 bp downstream
Tssr10738	transcription start site region 10738	1139 bp downstream
Tssr15765	transcription start site region 15765	1348 bp upstream