rs29609322 SNP Detail

Summary

• ID
  rs29609322
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194721565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAATTGAA ACCAGAACAC
  CTCTCAGTTA TTTTTTATCT GGATGCTTAT AGCCCTTTAC ATAAAATTGT CACTCTGGGA
  TAATTTTTCA TAATTGGCTA GTAATGTAGG TTTTTTTTTA ACAGCACCCT CCTGAATCAG
  ATTTATAAAA CCATGCTGTC AACCCAGGTA TAAAGACTTT TGTTAAAGCA TTAGTTTTTT
  W
  AAATTAAGCC TTACCAGACT TTTTAGAAGT GAATACAGTG TATTTTTGTT AACTGGGGGA
  AGAAAGATCT GCAACCAGTT TAGTAGATCA AATGAATTAA GTTTAGTCCC TAGCATCTTT
  AAGAAGTTGG TCTAGGCCTT CTGTTTGGAA GCTGGCATAT AGTCTCAGGA ATAGATAGCA
  CATTGATATT AACATACTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548618	NES12893361	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609322					SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548618	NES12893361	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194721565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330023F24Rik	RIKEN cDNA A330023F24 gene			1349 bp downstream
Cd46	CD46 antigen, complement regulatory protein			mRNA-UTR
				Noncoding-Transcript-Variant
Mir29c	microRNA 29c			1623 bp downstream
Mirc29	microRNA cluster 29, including Mir29b-2 through Mir29c			1623 bp distal
Rr426755	regulatory region 426755			942 bp distal
Rr426756	regulatory region 426756			1276 bp proximal
Rr426757	regulatory region 426757			1359 bp proximal