rs29609632 SNP Detail

Summary

• ID
  rs29609632
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29196960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTGAATA AACATATGGA
  GCCTATTCCT CATCTGATAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACAGTCAG TCAGTCAGTC AGTCAGTCAG TCATATGAGG GAAGCAGACA GCATACATCG
  AAATGGAATG TGTTTGTGGT ATTTTCTAGA AGGCAATGAA GCAGAAGGAG CGGATGGGTA
  R
  GGAGGCGAGT GGTTAAACTG CTAGTGTGCA TGTTGGAAGG TCTATCAAGA TGGCCCTAGA
  GTAGACACCT GCAGGAAGGG AGGGGAGTAG ACAGGAGAGG GATATGTGGG AGAACTTTTT
  AAAAAAGGTG TGAGGGAGCA TGGGATCACA AGGAGGCCAG AGAGGATGCA CCACAGGGTG
  AGAAAGAAGC AATAGTTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47862012	NES11680877	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609632					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862012	NES11680877	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29196960 () rs orientation: forward

Symbol	Name	Function Class
Gm67825	predicted gene, 67825	within coordinates
Gm68017	predicted gene, 68017	1798 bp upstream
Rr627508	regulatory region 627508	1154 bp distal
Rr627509	regulatory region 627509	721 bp distal
Rr627510	regulatory region 627510	1308 bp proximal
Rr627511	regulatory region 627511	1809 bp proximal
Rr627512	regulatory region 627512	1837 bp proximal