rs29610038 SNP Detail

Summary

• ID
  rs29610038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190919289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGGCAA ATGGCGGCGG
  CAACCCACCC TGGGCTGGGC TGAGCTGAGG ATTCCAGTGC TGTTCTGGTT CTGCCTTTGT
  CATCTTCCCA GGGTTTCCAT TGTATTGTTG TAGGGGTCCC TGGGCTGGGC TGAGGGGCTC
  CTGAAATGGA GACTCTCTCC CCCAAGCTAC CTCCTGCTCT GTAGATTTCT GAGAGCCAAA
  R
  GAGGCAACTG TGGTGAAAAC TGTTGCATGG CCCAATGACT AACTCATTTT TCTGGAAACT
  ACAGCTGAGA AGCTCTGTCA GATCAGATTC TAGGGCACAG CCTATCCTCT ATCCGCCCCT
  CCCATACACA CTTCCAAACT TTAACTCATG TAGGTACCCA GTCACAGAGG CACTTACCCA
  AGGCAGGGAT TGGATCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547744	NES12907592	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610038					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547744	NES12907592	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190919289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1219	CpG island 1219	1338 bp distal
Rr372645	regulatory region 372645	1779 bp upstream
Rr426070	regulatory region 426070	160 bp distal
Rr426071	regulatory region 426071	430 bp distal
Rr426072	regulatory region 426072	389 bp distal
Tssr10737	transcription start site region 10737	1170 bp downstream
Tssr10738	transcription start site region 10738	391 bp downstream
Tssr15765	transcription start site region 15765	600 bp upstream