rs29610039 SNP Detail

Summary

• ID
  rs29610039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190919247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAACCAC TAATCAAACA
  CTGGGTTTCC GGGTGCTGGA TAACAGTGGC AAATGGCGGC GGCAACCCAC CCTGGGCTGG
  GCTGAGCTGA GGATTCCAGT GCTGTTCTGG TTCTGCCTTT GTCATCTTCC CAGGGTTTCC
  ATTGTATTGT TGTAGGGGTC CCTGGGCTGG GCTGAGGGGC TCCTGAAATG GAGACTCTCT
  Y
  CCCCAAGCTA CCTCCTGCTC TGTAGATTTC TGAGAGCCAA AAGAGGCAAC TGTGGTGAAA
  ACTGTTGCAT GGCCCAATGA CTAACTCATT TTTCTGGAAA CTACAGCTGA GAAGCTCTGT
  CAGATCAGAT TCTAGGGCAC AGCCTATCCT CTATCCGCCC CTCCCATACA CACTTCCAAA
  CTTTAACTCA TGTAGGTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547745	NES12907591	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610039					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547745	NES12907591	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190919247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1219	CpG island 1219	1296 bp distal
Rr372645	regulatory region 372645	1821 bp upstream
Rr426070	regulatory region 426070	118 bp distal
Rr426071	regulatory region 426071	388 bp distal
Rr426072	regulatory region 426072	347 bp distal
Tssr10737	transcription start site region 10737	1128 bp downstream
Tssr10738	transcription start site region 10738	349 bp downstream
Tssr15765	transcription start site region 15765	558 bp upstream