rs29610115 SNP Detail

Summary

• ID
  rs29610115
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194721340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAACA TAGCTACTCT
  GTCCAAAGCT CCCAATTAAT TTGTACTGAA AATTTGATTG AAACTCCCCC AGGCCATGAT
  TCTGGCTCTT TAATGAGTTA AGTGCTAGAA AGTTGAATTT AATATCAAAG CACAAAAACA
  ATGATTTAAA ATTTATTTCC ATTTAGAAAA ATCATAATAT TCTCATTGAA TACTTAAACT
  K
  TGCCATATCC TGATGTCCTG AGAAGCAAAT TGAAACCAGA ACACCTCTCA GTTATTTTTT
  ATCTGGATGC TTATAGCCCT TTACATAAAA TTGTCACTCT GGGATAATTT TTCATAATTG
  GCTAGTAATG TAGGTTTTTT TTTAACAGCA CCCTCCTGAA TCAGATTTAT AAAACCATGC
  TGTCAACCCA GGTATAAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548621	NES12893354	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610115					SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548621	NES12893354	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194721340 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330023F24Rik	RIKEN cDNA A330023F24 gene			1124 bp downstream
Cd46	CD46 antigen, complement regulatory protein			mRNA-UTR
				Noncoding-Transcript-Variant
Mir29b-2	microRNA 29b-2			1912 bp downstream
Mir29c	microRNA 29c			1398 bp downstream
Mirc29	microRNA cluster 29, including Mir29b-2 through Mir29c			1398 bp distal
Rr426755	regulatory region 426755			717 bp distal
Rr426756	regulatory region 426756			1501 bp proximal
Rr426757	regulatory region 426757			1584 bp proximal
Tssr10863	transcription start site region 10863			1914 bp downstream