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rs29610117 SNP Detail
Summary
  • ID
    rs29610117
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr1:194721141 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GTATTTTTTA ATTTACCCCA CTAAAGTAGG AGACTGCAGC
    TCCTCTAAGT ATGACAGATT GGGTCTGTGG TATTAACTAC ACATTAAGTC TTTAAAAAAA
    M
    AAAAAACATA GCTACTCTGT CCAAAGCTCC CAATTAATTT GTACTGAAAA TTTGATTGAA
    ACTCCCCCAG GCCATGATTC TGGCTCTTTA ATGAGTTAAG                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss49548623 NES12893349 PERLEGEN MM_PANEL2 f SNP C C A C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs29610117 SNP C C A C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49548623 NES12893349 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:194721141 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
A330023F24Rik RIKEN cDNA A330023F24 gene 925 bp downstream
Cd46 CD46 antigen, complement regulatory protein mRNA-UTR
Mir29b-2 microRNA 29b-2 1713 bp downstream
Mir29c microRNA 29c 1199 bp downstream
Mirc29 microRNA cluster 29, including Mir29b-2 through Mir29c 1199 bp distal
Rr426755 regulatory region 426755 518 bp distal
Rr426756 regulatory region 426756 1700 bp proximal
Rr426757 regulatory region 426757 1783 bp proximal
Tssr10863 transcription start site region 10863 1715 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory