GTATTTTTTA ATTTACCCCA CTAAAGTAGG AGACTGCAGC TCCTCTAAGT ATGACAGATT GGGTCTGTGG TATTAACTAC ACATTAAGTC TTTAAAAAAA M AAAAAACATA GCTACTCTGT CCAAAGCTCC CAATTAATTT GTACTGAAAA TTTGATTGAA ACTCCCCCAG GCCATGATTC TGGCTCTTTA ATGAGTTAAG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49548623 | NES12893349 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | A | C | C | C | C | C | C | C | C |
SNP Consensus Information | ||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs29610117 | SNP | C | C | A | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49548623 | NES12893349 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr1:194721141 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
A330023F24Rik | RIKEN cDNA A330023F24 gene | 925 bp downstream | ||||||
Cd46 | CD46 antigen, complement regulatory protein | mRNA-UTR | ||||||
Mir29b-2 | microRNA 29b-2 | 1713 bp downstream | ||||||
Mir29c | microRNA 29c | 1199 bp downstream | ||||||
Mirc29 | microRNA cluster 29, including Mir29b-2 through Mir29c | 1199 bp distal | ||||||
Rr426755 | regulatory region 426755 | 518 bp distal | ||||||
Rr426756 | regulatory region 426756 | 1700 bp proximal | ||||||
Rr426757 | regulatory region 426757 | 1783 bp proximal | ||||||
Tssr10863 | transcription start site region 10863 | 1715 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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