rs29610120 SNP Detail

Summary

• ID
  rs29610120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194720254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGTGGC TGCCAAGGTT
  AGAGATCACT TAGTGGGGGG TTTTAATTGT TATAATTTAT TGTTGTAAAA TATTCTCAGT
  TACAATTTCT GACATGTAGT ACTGTTATAA ACTAAGTACT GTTAAACGTT GGCTTTAATA
  AATAATTTGC TACATTCAAT CTATCATGTC TGTTTTATCT ACTATTTTTC ATTCATAATT
  Y
  TATGGCAATG AGAAGTGGTC CCTGGAAAGT TAATTTGCTG TGCCAATCAT AAGGAATTGG
  AAGTAGGTTG CTGCATGCAG ACATTAAAAA TGAAGGTCAT TAAGACAGGA ATGAAATTCT
  AAAGATGAAA GATTAGCAGA GACAGAAGGT TGGAGCTCTA GGCTGAGGGA TGTTACTAAA
  TGGGAAGACT ATTCTTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548626	NES12893341	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610120					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548626	NES12893341	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194720254 () rs orientation: forward

Symbol	Name	Function Class
A330023F24Rik	RIKEN cDNA A330023F24 gene	38 bp downstream
Cd46	CD46 antigen, complement regulatory protein	mRNA-UTR
Mir29b-2	microRNA 29b-2	826 bp downstream
Mir29c	microRNA 29c	312 bp downstream
Mirc29	microRNA cluster 29, including Mir29b-2 through Mir29c	312 bp distal
Rr426755	regulatory region 426755	117 bp proximal
Tssr10863	transcription start site region 10863	828 bp downstream