rs29610366 SNP Detail

Summary

• ID
  rs29610366
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57815243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATAAAAC ACATGTAATA
  TTTCACTTGC TTATTTAAAA TACTAAAGTA TCTGACCCCT TTGCAGCCCC GAAGATTTTA
  AAGGGGAGAG GGACACGGAA ATTTTAGAAT TTGTGCAGAG ATAGAGTAAG GTCGTGCGGT
  CTTTATACCG TCATTCAATT TTGTTTTAGA GGAGCATTCA TTGCTACTCA GACTCTGTTT
  S
  CAGAGAGTAA GCAAATGTGC AGTATGGCAG AGAAAAGAAA GGACAGGAAG TCAGAAATAG
  AAAAAGACTA TTCAAGTAGT AGAAAAAAAT ATTTTGAAAG AACTCTTTAA AAAGTTGCCT
  TCTGGATAAA ATATTTTATG AGCCTTATGA AATTGTGTTA CTTAACCAGA AAGCACTGTT
  CTGGGAAGAT GGGAGACAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47363908	NES11071182	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610366					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47363908	NES11071182	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57815243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi274	CpG island 274	312 bp distal
Rr411358	regulatory region 411358	1213 bp distal
Rr411359	regulatory region 411359	1523 bp distal
Rr411360	regulatory region 411360	1237 bp distal
Rr411361	regulatory region 411361	23 bp distal
Rr411362	regulatory region 411362	822 bp distal
Rr411363	regulatory region 411363	682 bp distal
Rr411364	regulatory region 411364	668 bp proximal
Spats2l	spermatogenesis associated, serine-rich 2-like	within coordinates
Tssr6747	transcription start site region 6747	1322 bp downstream
Tssr6748	transcription start site region 6748	1152 bp downstream
Tssr6749	transcription start site region 6749	1129 bp downstream
Tssr6750	transcription start site region 6750	985 bp upstream