rs29610369 SNP Detail

Summary

• ID
  rs29610369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57815800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGTTAA AAACCTTTTT
  CTGTAGAGCA ACAGAACAGA AATCATGTCA GATTCCGTAT GGCTTTAAAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACGACTAGCT CCAAGGGGGA
  ATTTGCATAA AAATACAATT AACTTGAATG CAGAGAATAT TTAAGAGATG AAGGGGAAAA
  Y
  ACTGAACATC TGGGAAAGGG GTGTATTAAT TGGCAATTTT TGTTCTTTAA TTTCTGAAAT
  ATTAAATGAG TGCCTAGGAA TCAATTTAGG TAGTGTGCTA ATTTAGTCAG GCAAAATGGC
  CAGGGCTTCT TTTGTGTCTG TTTTGTTGTG AGGAGCCCCC CACCAAAGTG GTCAATTGCT
  AGTTTCTCTG CTCGAACTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47363911	NES11071183	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610369					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47363911	NES11071183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57815800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi274	CpG island 274	869 bp distal
Rr411358	regulatory region 411358	1770 bp distal
Rr411360	regulatory region 411360	1794 bp distal
Rr411361	regulatory region 411361	580 bp distal
Rr411362	regulatory region 411362	1379 bp distal
Rr411363	regulatory region 411363	1239 bp distal
Rr411364	regulatory region 411364	111 bp proximal
Spats2l	spermatogenesis associated, serine-rich 2-like	within coordinates
Tssr6747	transcription start site region 6747	1879 bp downstream
Tssr6748	transcription start site region 6748	1709 bp downstream
Tssr6749	transcription start site region 6749	1686 bp downstream
Tssr6750	transcription start site region 6750	428 bp upstream