rs29610372 SNP Detail

Summary

• ID
  rs29610372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57816105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGGCAA AATGGCCAGG
  GCTTCTTTTG TGTCTGTTTT GTTGTGAGGA GCCCCCCACC AAAGTGGTCA ATTGCTAGTT
  TCTCTGCTCG AACTAATTTC AAGTGGCCAT TGTGGGAAGA GGTGATCAAA GGAACAAACA
  CTTAGGGCAC AGCATGGCAG CCAGTGAAGC GCTGCCACGT AGGTCACCTC TACTTGGAAA
  Y
  GGCAGCTAAG CCTTAGAAAT GCCTCATTTT TAGTCTACAA TCAGAGGCTA GTACCATTGC
  TAACAGTGGG TGTTCCTTCA TGGCTGGGTG TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT
  TTTGGAAGGG CAAAGGTGGT CTCCCCTGGA GGATCTTTAC AGAACTACAG TCAACATCTT
  AGGAGATAAG TCAGGATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47363914	NES11071185	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610372					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47363914	NES11071185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57816105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi274	CpG island 274	1174 bp distal
Rr411361	regulatory region 411361	885 bp distal
Rr411362	regulatory region 411362	1684 bp distal
Rr411363	regulatory region 411363	1544 bp distal
Rr411364	regulatory region 411364	within coordinates
Spats2l	spermatogenesis associated, serine-rich 2-like	within coordinates
Tssr6749	transcription start site region 6749	1991 bp downstream
Tssr6750	transcription start site region 6750	123 bp upstream