rs29610572 SNP Detail

Summary

• ID
  rs29610572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29197544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAATGGGT TAAATATGCA TGGGGGAGCA AGACAGAAGG
  AGGGTGTCGG GGAGAATTAT ACATCTCAGT GTGTCCTTGG AGTACCCAGA TTATTCTGAG
  R
  AAAAAAAATC CTAGTTGTGT ATATAGTGGT GTTTCCACAG AATGAGCCAA GCTGAGAGCT
  GGGTGGGCAT CACGGAATCC CAGAGGAGCC TAAGTAGAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47862022	NES11680807	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610572					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47862022	NES11680807	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29197544 () rs orientation: forward

Symbol	Name	Function Class
Gm67825	predicted gene, 67825	within coordinates
Gm68017	predicted gene, 68017	1214 bp upstream
Rr627508	regulatory region 627508	1738 bp distal
Rr627509	regulatory region 627509	1305 bp distal
Rr627510	regulatory region 627510	724 bp proximal
Rr627511	regulatory region 627511	1225 bp proximal
Rr627512	regulatory region 627512	1253 bp proximal
Rr627513	regulatory region 627513	1658 bp proximal