rs29610725 SNP Detail

Summary

• ID
  rs29610725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190917790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGGTCT TGTCTTCAAG
  TGGAAGGCAC GGCCGACAGC CTCGAGACCC CAAGCAGCAA GACCCGCTCC ATCAGAACCG
  TGGAAGGATA GCGTAGACAG AAGTCGGCAG AGCTTCGTGG GCACCTGGTC ATGACCGTGG
  TGCCCTCCCC CACGCCCGTT CTCCTGCTAG TCTAATCATT AGCTTTTAAT CTCCAAGTCG
  Y
  ACCTGGATAG AAACTCTCAG TTGTTTACAG AGTTCTGAGT CTGACATCCT CTGCCTCCCT
  CTCTTACTGA AACCCTAAAA GCGATAAGAC TCTCCAGGGA GAAGTCGCCC CCCGCCCCAC
  TTGGATGAAA CGCCTATCCC AGGCAAACAA AAGTCACTTT CTGCGGGACT CAGTCCCCTA
  GGCTCCCAGG AGAATCGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547751	NES12907585	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610725					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547751	NES12907585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190917790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1219	CpG island 1219	within coordinates
Tssr10735	transcription start site region 10735	1997 bp downstream
Tssr10736	transcription start site region 10736	1883 bp downstream
Tssr10737	transcription start site region 10737	286 bp upstream
Tssr10738	transcription start site region 10738	1095 bp upstream
Tssr15764	transcription start site region 15764	584 bp upstream
Tssr15765	transcription start site region 15765	864 bp downstream