rs29610726 SNP Detail

Summary

• ID
  rs29610726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190917776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCGTTCT ATGGAGGTGG
  GTCTTGTCTT CAAGTGGAAG GCACGGCCGA CAGCCTCGAG ACCCCAAGCA GCAAGACCCG
  CTCCATCAGA ACCGTGGAAG GATAGCGTAG ACAGAAGTCG GCAGAGCTTC GTGGGCACCT
  GGTCATGACC GTGGTGCCCT CCCCCACGCC CGTTCTCCTG CTAGTCTAAT CATTAGCTTT
  Y
  AATCTCCAAG TCGTACCTGG ATAGAAACTC TCAGTTGTTT ACAGAGTTCT GAGTCTGACA
  TCCTCTGCCT CCCTCTCTTA CTGAAACCCT AAAAGCGATA AGACTCTCCA GGGAGAAGTC
  GCCCCCCGCC CCACTTGGAT GAAACGCCTA TCCCAGGCAA ACAAAAGTCA CTTTCTGCGG
  GACTCAGTCC CCTAGGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547752	NES12907584	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610726					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547752	NES12907584	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190917776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1219	CpG island 1219	within coordinates
Tssr10735	transcription start site region 10735	1983 bp downstream
Tssr10736	transcription start site region 10736	1869 bp downstream
Tssr10737	transcription start site region 10737	300 bp upstream
Tssr10738	transcription start site region 10738	1109 bp upstream
Tssr15764	transcription start site region 15764	570 bp upstream
Tssr15765	transcription start site region 15765	878 bp downstream