rs29610728 SNP Detail

Summary

• ID
  rs29610728
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190917394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGATCTG ACGGGATTAC
  AGCAGCATCG CGCGGGAAGC GCCAGGCTAA TGTTTTGCTT TGGGTTTTGC CTTGGAAACG
  GCTCTCGGGG CCCCACCCTC CGTCTCCCAC GCCCACACCC TGCTCCACAC CTCCACAACC
  CGGCCTCCAG CCGACCTGCC GGCAGGTAAA CCCCAGGCGT GTCGGCACAA CCCCGAAGAA
  W
  GTCAGGTGCC TAGAAATGAA AGTCATTTGG GATCTCCTCC TACCTGCCCC ATCTTTTTAC
  AGGCTGCCCT GGAATAAATA AACACCACTG TGCGGTGTAA CAGGGAGATG GGGGAACACA
  CGAACCCCGC CCCAGGCCGC TGGGGGCCCC GACAGAAATT TTTATTGTTT TACGGATTAA
  ATTGGCGTTC TATGGAGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547754	NES12907582	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610728					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547754	NES12907582	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190917394 () rs orientation: forward

Symbol	Name	Function Class
Atf3	activating transcription factor 3	1864 bp upstream
Cpgi1219	CpG island 1219	within coordinates
Rr396712	regulatory region 396712	1656 bp downstream
Rr426067	regulatory region 426067	1868 bp distal
Rr426069	regulatory region 426069	1367 bp distal
Rr426070	regulatory region 426070	within coordinates
Rr426071	regulatory region 426071	1431 bp proximal
Rr426072	regulatory region 426072	1485 bp proximal
Tssr10734	transcription start site region 10734	1692 bp downstream
Tssr10735	transcription start site region 10735	1601 bp downstream
Tssr10736	transcription start site region 10736	1487 bp downstream
Tssr10737	transcription start site region 10737	682 bp upstream
Tssr10738	transcription start site region 10738	1491 bp upstream
Tssr15763	transcription start site region 15763	1937 bp upstream
Tssr15764	transcription start site region 15764	188 bp upstream
Tssr15765	transcription start site region 15765	1260 bp downstream