rs29610732 SNP Detail

Summary

• ID
  rs29610732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190916994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTTGGCG GGCACATGTG
  GGGCAGGACG CTGAGGTGTA AAGACAGAGG CACCTGCTAA CGCCCGCCTT TGAGAGGAAG
  GCGATCAGAA GGTCACAGGG AGGTAGTTTG GGGTGTGAAG CAGAACTGAC CGGTGCCGCT
  GCCTCCATAG CACCTACCAC CCGGACTGTT ACGGTCCTGA GGAAAGGTCG CCGACGGTAG
  Y
  ACAACCGTAA GCAACTGATG GCCCCAGAGA CAGACATTTC GGGCAAAATC AAGTTCTCTG
  CACCCGGGTT CCTCAAGTCC AAGGCAGAGT CTCGCCCTTC ACAGGCCTCT GCCCTCCATC
  GAGGCCCCCG GAGTCTCTCG GTCCTTGCTG GCCCGGGAGG CCTAGGGTGG TTCCATCCCC
  GGGATCCTCT CAGATCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49547758	NES12907578	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610732					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49547758	NES12907578	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190916994 () rs orientation: forward

Symbol	Name	Function Class
Atf3	activating transcription factor 3	1464 bp upstream
Cpgi1219	CpG island 1219	within coordinates
Rr396712	regulatory region 396712	1256 bp downstream
Rr426067	regulatory region 426067	1468 bp distal
Rr426069	regulatory region 426069	967 bp distal
Rr426070	regulatory region 426070	34 bp proximal
Rr426071	regulatory region 426071	1831 bp proximal
Rr426072	regulatory region 426072	1885 bp proximal
Tssr10734	transcription start site region 10734	1292 bp downstream
Tssr10735	transcription start site region 10735	1201 bp downstream
Tssr10736	transcription start site region 10736	1087 bp downstream
Tssr10737	transcription start site region 10737	1082 bp upstream
Tssr10738	transcription start site region 10738	1891 bp upstream
Tssr15763	transcription start site region 15763	1537 bp upstream
Tssr15764	transcription start site region 15764	202 bp downstream
Tssr15765	transcription start site region 15765	1660 bp downstream