rs29610926 SNP Detail

Summary

• ID
  rs29610926
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194718054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGAGGGA GGGGATTGGG
  GGATGGTAGA GGAAGTTGCT AAGAAAATTA GGCTGAAATG GAAATCAGAA GAGTTGAATA
  TTATCATATG CAAATCTCAC CTTCCCCTTC ATTTACAGGA TTTTGACCCT TGTTAATAAC
  TGCCATCTAA TCTATTTATG ACCTAAAGCC CTCCCTATCA TGGGTTAGAG TTCCTAACCC
  W
  CAGGCTCTAA TTTTGCCAAC CAATGTCAGT GTCACTCAGA AACCCAGTGT ATAGATCTTC
  CAGCACTCAT CTGCAGCTAA GGCCCTGGAA AGCCCCAGGG AGGCTGCTGG GCCTTCTGTT
  TCTCCTCTGG CTGGCCCAGT TTCTGAGAAG TCAGTGTCAG CATTGCTAGG CTTCATTGCT
  ATCATCTTCT CTATTGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548632	NES12893318	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610926					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548632	NES12893318	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194718054 () rs orientation: forward

Symbol	Name	Function Class
A330023F24Rik	RIKEN cDNA A330023F24 gene	within coordinates
Cd46	CD46 antigen, complement regulatory protein	1080 bp downstream
Mir29b-2	microRNA 29b-2	1294 bp upstream
Mir29c	microRNA 29c	1801 bp upstream
Mirc29	microRNA cluster 29, including Mir29b-2 through Mir29c	1294 bp proximal
Rr426754	regulatory region 426754	1464 bp distal
Tssr10862	transcription start site region 10862	1519 bp downstream
Tssr10863	transcription start site region 10863	1368 bp upstream