rs29611308 SNP Detail

Summary

• ID
  rs29611308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57816734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGACACA GGATGTAAGG
  GCATATGCCA TGTGGACAGA CTTATAAATG GTTGTGTGCA TTGATCGCTG AATGGTTGAA
  TGTAATTCAC CTAATCAGGT CCTTCTACCA CTACTCCACC ATCAAGTGGA ATTGCACAAT
  TAAAATGGAA TTTGCATTAT ACAAAGAGTT AAAGGAAACA GTAAACATTA TAGGAGAAAA
  R
  CAAACCTTTT ATTCCCTTTC CTCTTTTGAA GACAACTCTT ATGAAGGTGT TATTTCCTTA
  ACACATCAAA ATGGCTAATT TAGGGCCGTG AAGCTTGTTA TATAAATAGG CCATATGTTG
  AATTCCTACC AGGATTTATC CATTCGGTGT ATTATAATGG CTAGGACCCC CTAAACACCT
  TAGTAGAGAG AAATGATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47363920	NES11071188	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29611308					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47363920	NES11071188	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57816734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi274	CpG island 274	1803 bp distal
Rr411361	regulatory region 411361	1514 bp distal
Rr411364	regulatory region 411364	569 bp distal
Spats2l	spermatogenesis associated, serine-rich 2-like	within coordinates
Tssr6750	transcription start site region 6750	503 bp downstream