rs29611742 SNP Detail

Summary

• ID
  rs29611742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64302073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCAGTAC TGGGACTAAA
  GACGTGAGTC ACCACTCCTG CCTAAGGGCA TGGGTTCTTA ATGTGAGTCC CGTGACCAGC
  CCTGCTACGG TTCCCGGACT ATTGGTTCTT GCTGCCAGGC TCGGGACCGC GGTGGGACGC
  ATGAGCAACC ATTCGCACAG TAGTCAGCTC CCGGTCGTAC TTGCTTGCAG TGTTTCCCAG
  R
  CAGTCTGATG GTGGTAGCAG TTCAAAGATT TTTTAAAAAT CTCTTTAGAG GCTAAAGGAT
  AGAACTGGCA ACTGGAGCTC ATTTGCTTGC TGCGTTTCCC AGGCAGCCTG TTCCTAGTAG
  AGACTCCATA AAGATTTTTA TATCTGAATG AGTATCCAGT GGTTAAGCGA TAGAACCGGT
  AACTAAACTC CATCAAATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39099550	mCV23508300	ABI	CRAMUS_MOUSE	f	SNP	A		G	G
ss149161859	ENSMUSSNP5857571	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss324379430	CHEV_13_64255567	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29611742					SNP	A	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64302073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	592 bp distal
Cpgi5774	CpG island 5774	21 bp distal
Gm47513	predicted gene, 47513	within coordinates
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	1736 bp downstream
Rr273318	regulatory region 273318	928 bp proximal
Rr281559	regulatory region 281559	within coordinates
Rr403820	regulatory region 403820	1780 bp downstream
Rr403821	regulatory region 403821	622 bp downstream
Tssr120196	transcription start site region 120196	539 bp downstream
Tssr123017	transcription start site region 123017	1804 bp upstream
Tssr123018	transcription start site region 123018	1511 bp upstream
Tssr123019	transcription start site region 123019	1114 bp upstream
Tssr123020	transcription start site region 123020	1070 bp upstream
Tssr123021	transcription start site region 123021	1052 bp upstream
Tssr123022	transcription start site region 123022	982 bp upstream
Zfp367	zinc finger protein 367	1060 bp upstream