rs29612409 SNP Detail

Summary

• ID
  rs29612409
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194813049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCACCTT GAGGCTTGCT
  AGCTTTTCAA ATCTTACCTT GGAGTGGGAG TGGAAGGACC TTCCTTAAAG TGGAAGCTCA
  AGGGAGTTAA TGAGGATTTG GGGTGGGAGA TAAAGTACAC AGTCTCACTG TGTGAAAACT
  GTATCCCTGG GCCTGTTTGT CTAGGCCTTC GGAGAAAGTG CATAGGGAAT GTCTCAAGAT
  W
  GAAATAAATT AAGGAGCTGA AATTGGGTTA GATATTTGAT GGCACCTATT AAATACCAAT
  ACCACGAAAG ACATCAATAT CTCCATTTCA CAGATAAGGA AACACAAAAA TATTAACTTT
  CCTCATAACC AAATTCTAGG ATTAGAAATT GCATCTCTCA ATATTCCTGC AACCCCCTGC
  TCCCCACACC GTTTCTCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548365	NES12890429	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29612409					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548365	NES12890429	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194813049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1251	CpG island 1251	153 bp proximal
Cr1l	complement C3b/C4b receptor 1 like	within coordinates
Gm32313	predicted gene, 32313	712 bp upstream
Rr29235	regulatory region 29235	within coordinates
Rr372684	regulatory region 372684	19 bp upstream
Rr396746	regulatory region 396746	179 bp downstream
Tssr383	transcription start site region 383	683 bp downstream
Tssr10864	transcription start site region 10864	889 bp upstream
Tssr15870	transcription start site region 15870	601 bp downstream
Tssr15871	transcription start site region 15871	703 bp downstream
Tssr15872	transcription start site region 15872	752 bp downstream
Tssr15873	transcription start site region 15873	764 bp downstream
Tssr15874	transcription start site region 15874	795 bp downstream