rs29615269 SNP Detail

Summary

• ID
  rs29615269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194705134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCAGAGC TTACTCTTTT
  CCTTTCATCT TCCTTATTTC CTCCAAAATG AGTTCTCCCC ACACCTTCTC CCTGCCCCTT
  TAGCACATTA TCATGGAAAC TCTGGGTTCT AGGCTTTTCC TGCAGCATTG CACTAAAGAC
  ACATGATCCC CTGCCATACC TATCATACCT TCATTGCAAT TGTATCCTGG ACAAACTATT
  R
  CCTTTTCTCT CTGCCATCCT TGGCACAGTC TAGGGTGAGG ATCAAACAAT TTAAGTTTGG
  GGATAGGAGA CATCCTGGCC CTCACCTCCA TCCAGACTTT TGCCAGGAAC CATTTTTAAT
  TCCTATATTT TCTAGCACTA ATTTTAAGGT AGACATTTGC CGCCAAAGCA CCTCCTCTCC
  CAAAGGGCCA CCTAAAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49548686	NES12893550	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	A		G	G	G
ss146544203	ENSMUSSNP4103332	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29615269					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548686	NES12893550	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194705134 () rs orientation: forward

Symbol	Name	Function Class
A330023F24Rik	RIKEN cDNA A330023F24 gene	within coordinates