rs29615946 SNP Detail

Summary

• ID
  rs29615946
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:3253511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTATTTC CTATTCTACT
  ATCTAGTACC AGGTGCTATC TCAATTTTTA AACTTAAACA GTTTTTTTCT TTTTTATTAA
  TATATTAATT CACTTAAAAA AATGATCTCA TCCTATGGTT GGTCCGTAAA CCAAGCAACT
  GACCAGGTCC AACAATAATG GGAGGTTTCC ATTGTGGTTT GAGATTCTAG TCCCTGAATA
  K
  AATTTTTTTA TCTGTAACAG GTCCTTAGTG ATATTTTATT GTTCTTCCCC TTTTGTGGTT
  TGAATATGCT TGCCCAGGGG GTAGCACTAC TACTTATGGG GTAGGTGTGT CCTTGTTGGA
  TGAAGTGTGT CATTGTTAGG GCTTTGAAGC TCCACCGTTG ATGAAGACAC AGTCTGATCC
  TGGCTTCCTT TGGATGAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49549252	NES12913332	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29615946					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49549252	NES12913332	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3253511 () rs orientation: forward

Symbol	Name	Function Class
Gm37338	predicted gene, 37338	292 bp downstream
Tssr28246	transcription start site region 28246	514 bp downstream
Tssr28247	transcription start site region 28247	454 bp downstream
Tssr28248	transcription start site region 28248	403 bp downstream
Tssr28249	transcription start site region 28249	385 bp downstream
Tssr28250	transcription start site region 28250	364 bp downstream
Tssr28251	transcription start site region 28251	346 bp downstream
Tssr28252	transcription start site region 28252	334 bp downstream
Tssr28253	transcription start site region 28253	319 bp downstream