rs29615949 SNP Detail

Summary

• ID
  rs29615949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:3253160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCCTCTG GCTGTTTAGT
  TGATTCTCAC TTACTTCACT TCCCAACCTT TACTGTTACA CAAATACCAG GTTGTGGTGG
  CTTCTGATTG GTATACTCTA CATATATAGT CCTTGATGTG GAACCCTGGT ACCAAGAGTC
  TTCCTTGTCT CCTAGTATTG TAGCTTGATC TTGTGTGTTT CCTGATTTTC TACTTGTCAC
  Y
  ATTAAGTTCC TGTCACTCCT TCTCTTGCTT GGTGTTTCCA CTATCCTAGT CTTTTGCCAT
  AAATGAAGAT TTTTACTTGA ACTTAAAATG GGGGTCATAA TGCATGAAGA TACTTACTCA
  GTGAAACATG AATTTATGGA TACCTACATG CTACTATTTC CTATTCTACT ATCTAGTACC
  AGGTGCTATC TCAATTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49549255	NES12913329	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29615949					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49549255	NES12913329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3253160 () rs orientation: forward

Symbol	Name	Function Class
Gm37338	predicted gene, 37338	within coordinates
Tssr28246	transcription start site region 28246	163 bp downstream
Tssr28247	transcription start site region 28247	103 bp downstream
Tssr28248	transcription start site region 28248	52 bp downstream
Tssr28249	transcription start site region 28249	34 bp downstream
Tssr28250	transcription start site region 28250	13 bp downstream
Tssr28251	transcription start site region 28251	within coordinates
Tssr28252	transcription start site region 28252	12 bp upstream
Tssr28253	transcription start site region 28253	24 bp upstream