rs29615951 SNP Detail

Summary

• ID
  rs29615951
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:3252841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTCTTTC CATCAGTGTT
  GGGCTCACTC TCCCTGTGTG ATAGGATATC CCTTACTAAA TATACAATGT GGACACTCTG
  GAAAACACCT GGATTCAGCA GCTTTATCCT AATTACTCAC TTGAAGGAGA CTCAAAGCTG
  AGTATTCTGT AATTTTCTAG TTTGAACTAT CTTGAAAGGA GAATGCAGAC ATTGGGAAGA
  W
  AGTGCCAGAC ATCTTCAATT TGAAAGCCAG AAGTTATTTA CTGGACAACA GCTTGACTGG
  ACACCTACAT TATCAGAATC AAGGATTTGC CAAACATTTG AAATATTGAC CTTTCTAAAT
  GTCCTCTGGC TGTTTAGTTG ATTCTCACTT ACTTCACTTC CCAACCTTTA CTGTTACACA
  AATACCAGGT TGTGGTGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49549257	NES12913337	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29615951					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49549257	NES12913337	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3252841 () rs orientation: forward

Symbol	Name	Function Class
Gm37338	predicted gene, 37338	252 bp upstream
Tssr28246	transcription start site region 28246	143 bp upstream
Tssr28247	transcription start site region 28247	211 bp upstream
Tssr28248	transcription start site region 28248	235 bp upstream
Tssr28249	transcription start site region 28249	276 bp upstream
Tssr28250	transcription start site region 28250	297 bp upstream
Tssr28251	transcription start site region 28251	319 bp upstream
Tssr28252	transcription start site region 28252	331 bp upstream
Tssr28253	transcription start site region 28253	343 bp upstream