rs29615953 SNP Detail

Summary

• ID
  rs29615953
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:3252663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAATGCC AGGGCCAAAA
  AGTGGGAGCA GGTGCGTAGA GGAGTGGGGG GAGGGTATGG GGAACTTTTG TGATAGCATA
  GGAAATGTAA ATGAGGAAAA TAACTAATAA AAAAATATTT TTTAAAACAC GGGAGAATTC
  CAAAAAAAAA AAAATGCTGA AATACTATGA AGTCATATGT GGTCTTTCCA TCAGTGTTGG
  K
  CTCACTCTCC CTGTGTGATA GGATATCCCT TACTAAATAT ACAATGTGGA CACTCTGGAA
  AACACCTGGA TTCAGCAGCT TTATCCTAAT TACTCACTTG AAGGAGACTC AAAGCTGAGT
  ATTCTGTAAT TTTCTAGTTT GAACTATCTT GAAAGGAGAA TGCAGACATT GGGAAGATAG
  TGCCAGACAT CTTCAATTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49549259	NES12913335	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29615953					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49549259	NES12913335	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3252663 () rs orientation: forward

Symbol	Name	Function Class
Gm37338	predicted gene, 37338	430 bp upstream
Tssr28246	transcription start site region 28246	321 bp upstream
Tssr28247	transcription start site region 28247	389 bp upstream
Tssr28248	transcription start site region 28248	413 bp upstream
Tssr28249	transcription start site region 28249	454 bp upstream
Tssr28250	transcription start site region 28250	475 bp upstream
Tssr28251	transcription start site region 28251	497 bp upstream
Tssr28252	transcription start site region 28252	509 bp upstream
Tssr28253	transcription start site region 28253	521 bp upstream