rs29616205 SNP Detail

Summary

• ID
  rs29616205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194702407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCCATCA TGTGCCTAGT GATGGAGGAG AGTGAAAGCA
  GACATAGGAG CTCATCTCAG ATGTGGTAGA CTTGTGGTTT GTGTTTTTCA AATAGCCCCT
  Y
  TGTCTCTGTC TCTGTCTCTC CTCTCCTCTT CTCTTCTCTT CTCTTCTCTT CTCTCTCCCT
  CCCTCCCTCC CTCCCTCTCT CTCTCTCTCT CTCTCTCTCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49548692	NES12893684	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29616205					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548692	NES12893684	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194702407 () rs orientation: forward

Symbol	Name	Function Class
A330023F24Rik	RIKEN cDNA A330023F24 gene	within coordinates
Gm37027	predicted gene, 37027	1782 bp upstream
Rr426749	regulatory region 426749	1793 bp distal
Rr426750	regulatory region 426750	1700 bp distal
Rr426751	regulatory region 426751	1565 bp distal
Tssr10861	transcription start site region 10861	1499 bp downstream
Tssr15868	transcription start site region 15868	1847 bp upstream