rs29616208 SNP Detail

Summary

• ID
  rs29616208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194699796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGAACATTCA GGACTGCGGC ACCTTGTATC TGGACAGGGA TTTGGGACTG
  Y
  GCAGGAGACG ACTGGTGGTC CAGTGTGGCT TAAGGACTTG ATGGCGTAAC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548695	NES12893679	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29616208					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548695	NES12893679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194699796 () rs orientation: forward

Symbol	Name	Function Class
9630010A21Rik	RIKEN cDNA 9630010A21 gene	1040 bp downstream
A330023F24Rik	RIKEN cDNA A330023F24 gene	within coordinates
Gm37027	predicted gene, 37027	81 bp downstream
Rr426748	regulatory region 426748	56 bp distal
Rr426749	regulatory region 426749	within coordinates
Rr426750	regulatory region 426750	819 bp proximal
Rr426751	regulatory region 426751	912 bp proximal
Tssr10859	transcription start site region 10859	307 bp downstream
Tssr10860	transcription start site region 10860	57 bp downstream
Tssr10861	transcription start site region 10861	1107 bp upstream
Tssr15868	transcription start site region 15868	752 bp downstream