rs29616209 SNP Detail

Summary

• ID
  rs29616209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194698782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTACTCTG GATTTCTTCA
  GGCTGCTGTT TGGTTTATTC TTTAAAATAC CTGATCTGAT AGAAGGATCT CATTTGTGGA
  GTTAGCAAAA AAAATGTTTT AATTATGCTT TTTAGCCTTA GGAAATTCAG GATTTAAAAG
  TCCTGATTTC ATGCCCCAAA ACAAAACAAA CAAACAAGCA AAATGAACAA AAAAAAGAGA
  Y
  GAAATAAAAA GGCAAAAATA ATGTCAGAAA AATAATGTCT GGGCACCATG ATTATAATTT
  TGGACTTGTC GTGACAGAAA GAGTTAATGA AATGGTGGTC TCATGGTGAG GACTATTTTA
  GCCTATGGCT AGGAGAAGCC CATATGGCTC AAGAAAAGAT GATGCAATAT TTAGTTAAGG
  ACAGCCCTGG TTGATTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss49548696	NES12893757	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs29616209					SNP	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548696	NES12893757	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194698782 () rs orientation: forward

Symbol	Name	Function Class
9630010A21Rik	RIKEN cDNA 9630010A21 gene	26 bp downstream
A330023F24Rik	RIKEN cDNA A330023F24 gene	925 bp upstream
Gm37027	predicted gene, 37027	1095 bp downstream
Rr426747	regulatory region 426747	1633 bp distal
Rr426748	regulatory region 426748	139 bp proximal
Rr426749	regulatory region 426749	959 bp proximal
Rr426750	regulatory region 426750	1833 bp proximal
Rr426751	regulatory region 426751	1926 bp proximal
Tssr10859	transcription start site region 10859	676 bp upstream
Tssr10860	transcription start site region 10860	942 bp upstream
Tssr15868	transcription start site region 15868	1766 bp downstream