rs29616212 SNP Detail

Summary

• ID
  rs29616212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194698267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGTAGGGT TCATTGGGTT AGTATCTGAG CTATTCTTTG
  TAGCATTGTC AGGAAAGGGG ATGTTAGAAG CTGTGCTTTG CTGCTAAGAG TTGTCACTAC
  Y
  CTAAAGTAAC TTGTACCTGG CTCTGAAGCA TCAGTGGAAC TTTCCTCATA AGAGTTTCCA
  GGTATGTGGA TGTGTTAAAG TATTGCTCAA GGACTGGGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548699	NES12893754	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29616212					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548699	NES12893754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194698267 () rs orientation: forward

Symbol	Name	Function Class
9630010A21Rik	RIKEN cDNA 9630010A21 gene	within coordinates
A330023F24Rik	RIKEN cDNA A330023F24 gene	1440 bp upstream
Gm37027	predicted gene, 37027	1610 bp downstream
Rr426747	regulatory region 426747	1118 bp distal
Rr426748	regulatory region 426748	654 bp proximal
Rr426749	regulatory region 426749	1474 bp proximal
Tssr10859	transcription start site region 10859	1191 bp upstream
Tssr10860	transcription start site region 10860	1457 bp upstream