rs29616885 SNP Detail

Summary

• ID
  rs29616885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194695485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAATATC TCAAAAGACT
  TTGGGAGAGC AAGCTTGTTC CATGGTACTC TGGCGGCAGA ACAAAGACCA AAAGGCTCAT
  ATTTACCTAT AGAGAAATTT GGTCTTTCCT GTGCTTTAGT TGTCCAAGTT CTCTAAAGAA
  GGGTCAAAGT TACTGAGTCA CAAAGAGGCA GAATAGTTTC TTGGCTGCAG TGTTTTCTAT
  R
  GAGGACCCTA TCTATGCCTT GGATAGTGCT AGAATATGAT ACCCTCTTCT GGCCTTATGG
  ACATCTACAG GCATAGCCCT CAGTGGGAGT CAGAGCCAGT ATACTAACAT GATCCATCTC
  CACTTCTAGT AGTTCAAGAT GGGATACAAA TGCTGGCACT TTAATGGTAT CATGTCTACT
  TAACAACTCT TTTTAATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548702	NES12893749	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29616885					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548702	NES12893749	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194695485 () rs orientation: forward

Symbol	Name	Function Class
9630010A21Rik	RIKEN cDNA 9630010A21 gene	569 bp upstream
Rr426746	regulatory region 426746	303 bp distal
Rr426747	regulatory region 426747	1168 bp proximal
Tssr10858	transcription start site region 10858	443 bp upstream