rs29616889 SNP Detail

Summary

• ID
  rs29616889
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194693029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACCCAC AGGAAGTAGG
  CCTTTGGGCC ATACAGGTCA ATGACCCTCA GGTATCATCA GGATAGGAGG TGCTGGTCAC
  CTTACCAAGA ATGGTTTTGC TTGTAACCAA GGAATAGTAC AAGGCCAGGG ATTAACATTT
  AATGACCTAG GATTCCTAGA TCCTTTGGTT TCTTTCATTT TTCACATAAG GTGCTGGGAA
  K
  TAGCATGGGC AGGAAGGACA CTTTAGAGCC TAGATTTCTG GTCTGAGAGA GTGACTTGGT
  CTGTTCAAGA GAAAGTACCT GCTTAAGAGC AGAGAGAACG CTGGTCACAG TGTCTGCTAT
  CCCAGTCCTG ATCCTACCCT AAGCATGCCT CCTTCTGATA TTGGCCTTAC CCATATTCTA
  TAAGGGGCTC ATGGTGTTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548706	NES12893814	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29616889					SNP	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548706	NES12893814	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194693029 () rs orientation: forward

Symbol	Name	Function Class
Rr426746	regulatory region 426746	1843 bp proximal